Protein Structure Prediction & Analysis

 

Software for prediction of conformational epitopes/antibody-binding sites.

• Connformational  Epitope Prediction Server (CEP) developed@Bioinformatics Centre, University of Pune
  
  

Software for analysis of PDB entries

• Ligand-Protein Contacts & Contacts of Structural Units
  
  

WWW-based Tutorials for Protein Structure

• Principles of Protein structure Birkbek College,London
• Tutorial on Peptide and Protein Structure   (The University of Georgia
• Principles of Protein Structure....etc. (ch. 1 to 5)  (ExPASy server)
• Homology modelling for beginners.

 

Secondary structure prediction

• PredictProtein
• PSIPRED
• JPRED
• PROF
• ZPRED
• nnPredict
• PSA
• SSP
• SOPM
• SOPMA
• GOR IV
• Protein Structure 2 / 3D Structure Prediction & Databases at CMS

 

Tertiary structure prediction

• Fold recognition (Threading) methods and links
• Expasy
• MODELLER

 

3D structural similarites (databases & Search tools)

• SCOP
• Pfam
• CATH
• FSSP
• 3Dee
• HOMSTRAD
• VAST

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